PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G15090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 320aa    MW: 35420.9 Da    PI: 6.2528
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G15090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.3e-5361331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++
  LPERR10G15090.1   6 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDRKI 98 
                      79****************************.99**************95334445667************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  g + gl+ktLvfykgrap ge+tdWvmheyrl
  LPERR10G15090.1  99 AC-AGDVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 133
                      **.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-613155IPR003441NAC domain
PROSITE profilePS5100557.8746156IPR003441NAC domain
PfamPF023653.3E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGTMTLPPGF RFHPTDDELV GYYLKRKVDN LKIELEVIPV IDLYKFEPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATSTGYWK ATGKDRKIAC AGDVFGLRKT LVFYKGRAPG  120
GERTDWVMHE YRLCQDLAHG VSNFMGAYAL CRVIKRHEAG LNGEPPAAKA AARTMSKVSS  180
SSSLVTVDHQ QMIGRTSNAN TSPFTPPTST NVSDLDDMFQ QIQSCVTPYS GFDLPPPMPQ  240
DMFFSGAGGF PARQDFYGEA MGTSVSEHEL KWDNLAGVGG GGGETWNTAA ASTLLCRQAS  300
DGDDLTAWFA AVADDNMSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53116012169NO APICAL MERISTEM PROTEIN
1ut4_B2e-53116012169NO APICAL MERISTEM PROTEIN
1ut7_A2e-53116012169NO APICAL MERISTEM PROTEIN
1ut7_B2e-53116012169NO APICAL MERISTEM PROTEIN
3swm_A3e-53116015172NAC domain-containing protein 19
3swm_B3e-53116015172NAC domain-containing protein 19
3swm_C3e-53116015172NAC domain-containing protein 19
3swm_D3e-53116015172NAC domain-containing protein 19
3swp_A3e-53116015172NAC domain-containing protein 19
3swp_B3e-53116015172NAC domain-containing protein 19
3swp_C3e-53116015172NAC domain-containing protein 19
3swp_D3e-53116015172NAC domain-containing protein 19
4dul_A2e-53116012169NAC domain-containing protein 19
4dul_B2e-53116012169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332460.0CT833246.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI238F12, full insert sequence.
GenBankCT8332470.0CT833247.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612876.11e-164PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotA4VCM03e-70NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A0D9XMS20.0A0A0D9XMS2_9ORYZ; Uncharacterized protein
STRINGLOC_Os10g42130.11e-164(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-85NAC domain containing protein 71